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1
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Yudkina A.V.
, Endutkin A.V.
, Diatlova E.A.
, Zharkov D.O.
A Non-Canonical Nucleotide from Viral Genomes Interferes with the Oxidative DNA Damage Repair System
DNA repair. 2024.
V.133. 103605
:1-8. DOI: 10.1016/j.dnarep.2023.103605
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2
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Kim D.V.
, Diatlova E.A.
, Zharkov T.D.
, Melentyev V.S.
, Yudkina A.V.
, Endutkin A.V.
, Zharkov D.O.
Back-Up Base Excision DNA Repair in Human Cells Deficient in the Major AP Endonuclease, APE1
International Journal of Molecular Sciences. 2024.
V.25. N1. 64
:1-16. DOI: 10.3390/ijms25010064
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3
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Yudkina A.V.
, Kim D.V.
, Zharkov T.D.
, Zharkov D.O.
, Endutkin A.V.
Probing the Conformational Restraints of DNA Damage Recognition with β-L-Nucleotides
International Journal of Molecular Sciences. 2024.
V.25. N11. 6006
:1-19. DOI: 10.3390/ijms25116006
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4
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Endutkin A.V.
, Yudkina A.V.
, Zharkov T.D.
, Barmatov A.E.
, Petrova D.V.
, Kim D.V.
, Zharkov D.O.
Repair and DNA Polymerase Bypass of Clickable Pyrimidine Nucleotides
Biomolecules. 2024.
V.14. N6. 681
:1-16. DOI: 10.3390/biom14060681
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5
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Yudkina A.
, Bulgakov N.
, Kim D.
, Baranova S.
, Ishchenko A.
, Saparbaev M.
, Koval V.
, Zharkov D.
Abasic Site–Peptide Cross-Links are Blocking Lesions Repaired by AP Endonucleases
Nucleic Acids Research. 2023.
V.51. N12. P.6321-6336. DOI: 10.1093/nar/gkad423
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6
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Yudkina A.V.
, Barmatov A.E.
, Bulgakov N.A.
, Boldinova E.O.
, Shilkin E.S.
, Makarova A.V.
, Zharkov D.O.
Bypass of Abasic Site–Peptide Cross-Links by Human Repair and Translesion DNA Polymerases
International Journal of Molecular Sciences. 2023.
V.24. N13. 10877
:1-22. DOI: 10.3390/ijms241310877
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7
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Юдкина А.В.
, Коваленко Е.А.
, Ендуткин А.В.
, Панфёрова Е.П.
, Кириленко А.А.
, Коханенко А.А.
, Жарков Д.О.
Факторы, влияющие на стабильность тримерной формы 2'-дезоксиуридин-5'-трифосфатнуклеотидгидролазы Escherichia coli
Молекулярная биология. 2023.
Т.57. №2. С.330-339. DOI: 10.31857/s0026898423020246
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8
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Endutkin A.V.
, Yudkina A.V.
, Zharkov T.D.
, Kim D.V.
, Zharkov D.O.
Recognition of a Clickable Abasic Site Analog by DNA Polymerases and DNA Repair Enzymes
International Journal of Molecular Sciences. 2022.
V.23. N21. 13353
:1-14. DOI: 10.3390/ijms232113353
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9
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Yudkina A.V.
, Shilkin E.S.
, Makarova A.V.
, Zharkov D.O.
Stalling of Eukaryotic Translesion DNA Polymerases at DNA-Protein Cross-Links
Genes. 2022.
V.13. N2. 166
:1-15. DOI: 10.3390/genes13020166
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10
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Yudkina A.V.
, Zharkov D.O.
Miscoding and DNA Polymerase Stalling by Methoxyamine-Adducted Abasic Sites
Chemical Research in Toxicology. 2022.
V.35. N2. P.303-314. DOI: 10.1021/acs.chemrestox.1c00359
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11
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Torgasheva N.A.
, Diatlova E.A.
, Grin I.R.
, Endutkin A.V.
, Mechetin G.V.
, Vokhtantsev I.P.
, Yudkina A.V.
, Zharkov D.O.
Noncatalytic Domains in DNA Glycosylases
International Journal of Molecular Sciences. 2022.
V.23. N13. 7286
:1-22. DOI: 10.3390/ijms23137286
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12
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Boldinova E.O.
, Yudkina A.V.
, Shilkin E.S.
, Gagarinskaya D.I.
, Baranovskiy A.G.
, Tahirov T.H.
, Zharkov D.O.
, Makarova A.V.
Translesion Activity of PrimPol on DNA with Cisplatin and DNA–Protein Cross-Links
Scientific Reports. 2021.
V.11. N1. 17588
:1-12. DOI: 10.1038/s41598-021-96692-y
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13
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Popov A.V.
, Endutkin A.V.
, Yatsenko D.D.
, Yudkina A.V.
, Barmatov A.E.
, Makasheva K.A.
, Raspopova D.Y.
, Diatlova E.A.
, Zharkov D.O.
Molecular Dynamics Approach to Identification of New OGG1 Cancer-Associated Somatic Variants with Impaired Activity
Journal of Biological Chemistry. 2021.
V.296. 100229
:1-13. DOI: 10.1074/jbc.ra120.014455
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14
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Popov A.V.
, Yudkina A.V.
, Vorobjev Y.N.
, Zharkov D.O.
Catalytically Competent Conformation of the Active Site of Human 8-Oxoguanine-DNA Glycosylase
Biochemistry (Moscow). 2020.
V.85. N2. P.192-204. DOI: 10.1134/s0006297920020066
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15
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Yudkina A.V.
, Zharkov D.O.
Protein Engineering of DNA-Dependent Enzymes
Advances in Experimental Medicine and Biology. 2020.
V.1241. P.19-33. DOI: 10.1007/978-3-030-41283-8_2
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16
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Yudkina A.V.
, Endutkin A.V.
, Diatlova E.A.
, Moor N.A.
, Vokhtantsev I.P.
, Grin I.R.
, Zharkov D.O.
Displacement of Slow-Turnover DNA Glycosylases by Molecular Traffic on DNA
Genes. 2020.
V.11. N8. 866
:1-21. DOI: 10.3390/genes11080866
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17
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Yudkina A.Y.
, Shilkin E.S.
, Endutkin A.V.
, Makarova A.V.
, Zharkov D.O.
Reading and Misreading 8-oxoguanine, a Paradigmatic Ambiguous Nucleobase
Crystals. 2019.
V.9. N5. 269
. DOI: 10.3390/cryst9050269
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18
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Yudkina A.V.
, Sokolov M.N.
, Abramov P.A.
, Grin I.R.
, Zharkov D.O.
Platinum Polyoxoniobates Form Adducts with DNA
Russian Journal of Bioorganic Chemistry. 2019.
V.45. N6. P.641-646. DOI: 10.1134/s1068162019060414
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19
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Yudkina A.V.
, Dvornikova A.P.
, Zharkov D.O.
Variable Termination Sites of DNA Polymerases Encountering a DNA–Protein Cross-Link
PLoS One. 2018.
V.13. N6. e0198480
:1-17. DOI: 10.1371/journal.pone.0198480
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20
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Endutkin A.V.
, Yudkina A.V.
, Sidorenko V.S.
, Zharkov D.O.
Transient Protein–Protein Complexes in Base Excision Repair
Journal of Biomolecular Structure and Dynamics. 2018.
V.37. N17. P.4407-4418. DOI: 10.1080/07391102.2018.1553741
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